some application (ex. google-chrome-stable) will default use the all activities option.
is there any fix about this or just could add the window rules to change?

https://bugs.kde.org/show_bug.cgi?id=274931
You'll have to apply a rule or make chrome use the system titlebar.

actually i did not just chrome has this problem. that just an example.
Every window which has not title bar has same problem.

yes. see the linked bug - behavior is intended ...