I am sure that Kdenlive can read your quicktime footage.
To enable quicktime, compile MLT with libquicktime/libquicktime-dev as explained here:
http://www.kdenlive.org/user-manual/downloading-and-installing-kdenlive/installing-source
Could you please provide your footage?
Without footage, noone can help you.
Otherwize, if you are not sure, please use our live DVD and open your media.
Our live DVD includes libquicktime.